Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_0224Hypothetical protein. (580 aa)    
Predicted Functional Partners:
Swit_0223
PFAM: LVIVD repeat protein.
 
     0.955
Swit_0226
Hypothetical protein.
 
     0.876
Swit_0590
PFAM: cyclic nucleotide-binding; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
 
    0.810
Swit_0588
Hypothetical protein.
 
     0.792
Swit_0589
Hypothetical protein.
 
     0.792
Swit_3192
PFAM: Tetratricopeptide TPR_2 repeat protein.
 
     0.774
Swit_3190
PFAM: Polypeptide-transport-associated domain protein, ShlB-type.
 
     0.762
Swit_1382
Hypothetical protein.
  
     0.754
Swit_3898
Hypothetical protein.
  
     0.727
Swit_2033
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
  
     0.700
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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