STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_0258PFAM: transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (334 aa)    
Predicted Functional Partners:
Swit_0257
PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.999
Swit_0259
PFAM: periplasmic binding protein.
 
 
 0.998
Swit_3189
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
  
 0.751
Swit_1191
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
  
 0.697
Swit_4145
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
  
 0.449
Swit_4253
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
  
 0.439
Swit_4197
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
  
 0.436
Swit_4085
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
  
 0.429
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
  
  
 0.427
ribB-2
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
  
  
 0.427
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.