Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_0284PFAM: Xylose isomerase domain protein TIM barrel. (272 aa)    
Predicted Functional Partners:
Swit_0283
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
  
  
 0.790
Swit_0281
Hypothetical protein.
       0.781
Swit_0282
PFAM: AMP-dependent synthetase and ligase.
       0.773
Swit_1634
PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain.
 
  
 0.734
Swit_1635
PFAM: AP endonuclease 2 domain protein; Xylose isomerase domain protein TIM barrel.
 
   
 0.687
Swit_1628
PFAM: Xylose isomerase domain protein TIM barrel.
 
   
 0.523
Swit_3270
PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding.
 
  
 0.487
Swit_2411
PFAM: cytochrome c, class I.
     
 0.485
Swit_0280
Hypothetical protein.
       0.463
Swit_4279
2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding.
 
  
 0.460
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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