Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Swit_0285PFAM: ferredoxin. (107 aa)    
Predicted Functional Partners:
Swit_3235
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
  
 0.895
Swit_0002
NifU-like involved in Fe-S cluster formation.
  
 0.811
Swit_2913
TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; Belongs to the HesB/IscA family.
 
 0.783
Swit_0052
PFAM: aminotransferase, class V.
 
 0.755
Swit_0051
Cysteine desulfurase; PFAM: aminotransferase, class V.
  
 0.713
Swit_2055
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
 
  
 0.670
Swit_1964
PFAM: cytochrome P450.
 
 0.634
Swit_1021
PFAM: cytochrome P450.
 
 0.624
Swit_3269
PFAM: cytochrome P450.
 
 0.620
Swit_0590
PFAM: cyclic nucleotide-binding; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
   
 
 0.614
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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