STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_0294PFAM: oxidoreductase domain protein. (384 aa)    
Predicted Functional Partners:
Swit_1902
PFAM: Xylose isomerase domain protein TIM barrel.
 
  
 0.712
Swit_1892
PFAM: Xylose isomerase domain protein TIM barrel.
 
  
 0.690
Swit_3183
PFAM: oxidoreductase domain protein.
  
     0.687
Swit_1893
PFAM: Xylose isomerase domain protein TIM barrel.
 
  
 0.686
Swit_1628
PFAM: Xylose isomerase domain protein TIM barrel.
 
  
 0.671
Swit_1634
PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain.
  
     0.608
Swit_3182
PFAM: oxidoreductase domain protein; homoserine dehydrogenase, NAD-binding.
 
     0.604
Swit_0295
PFAM: short-chain dehydrogenase/reductase SDR; KR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
 0.571
Swit_1635
PFAM: AP endonuclease 2 domain protein; Xylose isomerase domain protein TIM barrel.
 
  
 0.532
Swit_0296
Palmitoyl-CoA hydrolase; PFAM: acyl-CoA thioesterase.
     
 0.522
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.