Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_0324PFAM: Rieske [2Fe-2S] domain protein. (442 aa)    
Predicted Functional Partners:
Swit_0325
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein.
     
 0.812
Swit_0889
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
 
 
 0.722
Swit_0323
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.
       0.697
Swit_4281
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
 
 
 0.695
Swit_1757
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
 
 
 0.692
Swit_1875
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
 
 
 0.660
Swit_3368
Hypothetical protein.
 
 
 0.647
Swit_1532
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
 
 
 0.617
Swit_2635
2-chlorobenzoate 1,2-dioxygenase; PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
 
 
 0.604
Swit_4175
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
 
 
 0.578
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.