STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_0336PFAM: Rieske [2Fe-2S] domain protein. (447 aa)    
Predicted Functional Partners:
Swit_0333
PFAM: short-chain dehydrogenase/reductase SDR; KR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.772
Swit_0334
PFAM: short-chain dehydrogenase/reductase SDR; KR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.742
Swit_0335
PFAM: short-chain dehydrogenase/reductase SDR; KR.
       0.742
Swit_0889
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
 
 
 0.706
Swit_4281
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
 
 
 0.669
Swit_1757
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
 
 
 0.666
Swit_3368
Hypothetical protein.
 
 
 0.640
Swit_1875
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
 
 
 0.637
Swit_1532
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
 
 
 0.600
Swit_2635
2-chlorobenzoate 1,2-dioxygenase; PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
 
 
 0.574
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.