Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Swit_0364PFAM: cytochrome P450. (413 aa)    
Predicted Functional Partners:
Swit_0363
PFAM: ferredoxin.
 
 0.897
Swit_0362
PFAM: short-chain dehydrogenase/reductase SDR; KR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
 0.809
Swit_0361
PFAM: cytochrome P450.
 
    
0.799
Swit_3367
Cytochrome P450-like protein.
  
     0.758
Swit_4559
PFAM: cytochrome P450.
  
   
 0.672
Swit_0360
Transcriptional regulator, MarR family; PFAM: regulatory protein, MarR.
     
 0.647
Swit_0359
PFAM: cytochrome P450.
 
    
0.634
Swit_0365
Transcriptional regulator, TetR family; PFAM: regulatory protein, TetR.
     
 0.628
Swit_3393
PFAM: ferredoxin; cytochrome P450; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein.
 
0.626
Swit_3096
PFAM: ferredoxin; cytochrome P450; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein.
 
0.612
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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