STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_0380PFAM: short-chain dehydrogenase/reductase SDR; KR. (266 aa)    
Predicted Functional Partners:
Swit_0381
PFAM: sulfatase.
  
 
 0.858
Swit_0385
PFAM: Enoyl-CoA hydratase/isomerase.
  
 0.836
Swit_0382
PFAM: aldehyde dehydrogenase.
  
 
 0.807
Swit_0384
PFAM: AMP-dependent synthetase and ligase.
 
   0.802
Swit_0383
PFAM: General substrate transporter; major facilitator superfamily MFS_1.
  
  
 0.784
Swit_0379
PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase.
     
 0.524
Swit_3043
PFAM: sulfatase.
  
 
 0.452
Swit_2821
PFAM: Ankyrin.
   
 0.450
Swit_3098
PFAM: Ankyrin.
   
 0.450
Swit_0590
PFAM: cyclic nucleotide-binding; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
  
 0.448
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.