Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_0381PFAM: sulfatase. (778 aa)    
Predicted Functional Partners:
Swit_1048
PFAM: protein of unknown function DUF323.
 
   0.834
Swit_0380
PFAM: short-chain dehydrogenase/reductase SDR; KR.
   
 
 0.807
Swit_0385
PFAM: Enoyl-CoA hydratase/isomerase.
  
   0.793
Swit_0384
PFAM: AMP-dependent synthetase and ligase.
  
  
 0.780
Swit_0382
PFAM: aldehyde dehydrogenase.
     
 0.779
Swit_0383
PFAM: General substrate transporter; major facilitator superfamily MFS_1.
       0.773
Swit_0379
PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase.
     
 0.536
Swit_4256
PFAM: beta-lactamase domain protein.
   
 0.498
Swit_2821
PFAM: Ankyrin.
   
 0.485
Swit_3098
PFAM: Ankyrin.
   
 0.485
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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