Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_0385PFAM: Enoyl-CoA hydratase/isomerase. (243 aa)    
Predicted Functional Partners:
Swit_0382
PFAM: aldehyde dehydrogenase.
  
 0.862
Swit_0380
PFAM: short-chain dehydrogenase/reductase SDR; KR.
  
 0.849
Swit_1018
PFAM: Enoyl-CoA hydratase/isomerase.
 
   0.839
Swit_0384
PFAM: AMP-dependent synthetase and ligase.
  
 
 0.822
Swit_0381
PFAM: sulfatase.
  
   0.793
Swit_0383
PFAM: General substrate transporter; major facilitator superfamily MFS_1.
       0.773
Swit_2898
PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding.
 0.696
Swit_1764
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.
  
 0.678
Swit_1836
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.
  
 0.678
Swit_1998
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.
  
 0.678
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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