Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Swit_0430PFAM: PepSY-associated TM helix domain protein. (211 aa)    
Predicted Functional Partners:
Swit_0429
Periplasmic-like protein.
   
 0.994
Swit_0428
Hypothetical protein.
 
   
 0.964
Swit_0427
ApbE family lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.
 
     0.919
Swit_4603
PFAM: oxidoreductase FAD/NAD(P)-binding domain protein.
 
     0.647
Swit_3225
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
  
 0.625
Swit_1484
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
   
 0.499
Swit_0532
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
   
 0.464
Swit_3563
Uncharacterized iron-regulated membrane-like protein.
 
  
 0.457
Swit_4025
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
  
 0.453
Swit_4046
PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit.
 
   
 0.437
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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