Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_0504PFAM: Rieske [2Fe-2S] domain protein. (337 aa)    
Predicted Functional Partners:
Swit_1686
PFAM: Rieske [2Fe-2S] domain protein.
  
     0.773
Swit_1542
PFAM: Rieske [2Fe-2S] domain protein.
  
     0.772
Swit_3264
Vanillate monooxygenase; PFAM: Rieske [2Fe-2S] domain protein.
  
     0.772
Swit_3416
Vanillate monooxygenase; PFAM: Rieske [2Fe-2S] domain protein.
  
     0.771
Swit_4861
PFAM: Rieske [2Fe-2S] domain protein.
  
     0.770
Swit_3413
Vanillate monooxygenase; PFAM: Rieske [2Fe-2S] domain protein.
  
     0.769
Swit_1829
PFAM: Rieske [2Fe-2S] domain protein.
  
     0.768
Swit_4297
Phthalate 4,5-dioxygenase; PFAM: Rieske [2Fe-2S] domain protein.
  
     0.755
Swit_0503
PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit.
       0.620
Swit_0505
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
       0.615
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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