STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_0519PFAM: protein of unknown function DUF404; protein of unknown function DUF407. (481 aa)    
Predicted Functional Partners:
Swit_0520
PFAM: protein of unknown function DUF403.
    0.989
Swit_0521
PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein.
 
    0.976
Swit_1405
PFAM: 20S proteasome, A and B subunits.
 
    0.869
Swit_4391
PFAM: transglutaminase domain protein.
 
    0.838
Swit_4075
PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein.
 
    0.836
Swit_4760
PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein.
 
    0.836
Swit_4758
PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein.
 
    0.799
Swit_4759
PFAM: protein of unknown function DUF403; protein of unknown function DUF404; protein of unknown function DUF407.
 
   
0.710
Swit_0523
PFAM: GCN5-related N-acetyltransferase.
       0.578
Swit_0522
TIGRFAM: signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 36K type; PFAM: peptidase S49.
       0.577
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.