Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Swit_0532PFAM: TonB-dependent receptor; TonB-dependent receptor, plug. (936 aa)    
Predicted Functional Partners:
Swit_0531
3-phytase; PFAM: phytase.
 
     0.954
Swit_0629
Methyltransferase-like protein.
  
     0.685
Swit_1706
Hypothetical protein.
 
   
 0.673
Swit_2574
Hypothetical protein.
 
    0.636
Swit_4519
Methyltransferase-like protein.
  
     0.566
Swit_2590
PFAM: PDZ/DHR/GLGF domain protein.
 
   
 0.559
Swit_3983
PFAM: Antibiotic biosynthesis monooxygenase.
  
     0.533
Swit_0428
Hypothetical protein.
 
     0.504
Swit_3563
Uncharacterized iron-regulated membrane-like protein.
 
  
 0.500
Swit_1053
Transcriptional regulator, TetR family; PFAM: regulatory protein, TetR.
  
     0.499
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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