Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_0544PFAM: protein of unknown function DUF983. (128 aa)    
Predicted Functional Partners:
Swit_2823
PFAM: protein of unknown function DUF1052.
  
   
 0.727
Swit_2765
PFAM: protein of unknown function DUF983.
  
     0.726
Swit_4052
PFAM: uncharacterised conserved protein UCP032146; Belongs to the UPF0262 family.
 
   
 0.675
Swit_0543
Hypothetical protein.
       0.667
ctaG
Cytochrome c oxidase assembly protein CtaG/Cox11; Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I; Belongs to the COX11/CtaG family.
 
     0.583
Swit_4750
PFAM: protein of unknown function DUF1153.
  
     0.561
Swit_3534
PFAM: uncharacterised conserved protein UCP032025.
  
     0.560
Swit_0542
PFAM: cytochrome c biogenesis protein, transmembrane region.
       0.548
Swit_0441
Hypothetical protein.
  
     0.477
Swit_4710
PFAM: protein of unknown function DUF1476.
  
     0.460
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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