Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_0559PFAM: phosphoribosyltransferase. (248 aa)    
Predicted Functional Partners:
Swit_3825
TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein.
 
 
 0.882
Swit_3612
TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; SMART: AAA ATPase.
 
  
 0.857
Swit_0557
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
  
  
 0.814
Swit_0556
PFAM: protein of unknown function DUF1178.
       0.801
Swit_0558
Glutaredoxin 3; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.
       0.801
Swit_3214
PFAM: ComEC/Rec2-related protein.
 
  
 0.782
Swit_0560
PFAM: Methyltransferase type 11; Methyltransferase type 12.
     
 0.765
Swit_3007
PFAM: Prephenate dehydrogenase; NADP oxidoreductase, coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein.
  
  
 0.726
Swit_2443
TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein.
     
 0.676
Swit_4476
PFAM: DNA repair protein RadC; Belongs to the UPF0758 family.
 
    0.657
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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