Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
Swit_0564Thiosulfate reductase cytochrome B subunit (membrane anchoring protein)-like protein. (280 aa)    
Predicted Functional Partners:
Swit_0563
PFAM: oxidoreductase, molybdopterin binding.
    0.976
Swit_4346
PFAM: oxidoreductase, molybdopterin binding.
    0.905
Swit_0565
PFAM: type IV pilus assembly PilZ.
       0.532
Swit_0883
Uncharacterized protein.
  
     0.482
Swit_3181
Sigma-70, region 4 type 2; PFAM: regulatory protein, LuxR; Bacterio-opsin activator, HTH domain protein; Sigma-70, region 4 type 2.
  
     0.482
Swit_2542
Hypothetical protein.
  
     0.450
Swit_4844
PFAM: transcription elongation factor GreA/GreB domain protein.
  
     0.402
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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