Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_0604PFAM: Sporulation domain protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein. (397 aa)    
Predicted Functional Partners:
Swit_0605
PFAM: Sel1 domain protein repeat-containing protein; Sporulation domain protein.
 
    
0.747
Swit_3939
PFAM: Sporulation domain protein.
  
     0.747
Swit_4112
Hypothetical protein.
 
   
 0.740
Swit_0035
Hypothetical protein.
  
     0.734
Swit_2693
Hypothetical protein.
  
     0.728
Swit_0445
Hypothetical protein.
  
     0.722
Swit_0010
Hypothetical protein.
  
     0.715
Swit_0449
PFAM: polysaccharide biosynthesis protein.
 
     0.706
Swit_4866
Response regulator receiver protein.
 
  
 0.706
Swit_4479
Hypothetical protein.
 
     0.705
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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