Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_0615PFAM: Flp/Fap pilin component. (61 aa)    
Predicted Functional Partners:
Swit_0616
PFAM: Flp/Fap pilin component.
    
  0.948
Swit_3506
PFAM: Flp/Fap pilin component.
     
  0.900
Swit_3515
Flp pilus assembly protein CpaB-like protein.
  
  
 0.598
Swit_4869
PFAM: SAF domain.
  
  
 0.598
Swit_0614
PFAM: NUDIX hydrolase; Belongs to the Nudix hydrolase family.
       0.559
Swit_3513
Response regulator receiver protein.
  
  
 0.531
Swit_4866
Response regulator receiver protein.
  
  
 0.531
Swit_3500
PFAM: peptidase A24A, prepilin type IV.
  
  
 0.423
Swit_4870
PFAM: peptidase A24A, prepilin type IV.
  
  
 0.423
Swit_3514
PFAM: type II and III secretion system protein; Belongs to the bacterial secretin family.
  
  
 0.413
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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