Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_0625Transcriptional regulator, ArsR family; PFAM: regulatory protein, ArsR; Helix-turn-helix, type 11 domain protein. (117 aa)    
Predicted Functional Partners:
Swit_0626
PFAM: Activator of Hsp90 ATPase 1 family protein.
 
  
 0.955
Swit_1189
PFAM: Activator of Hsp90 ATPase 1 family protein.
 
  
 0.830
Swit_1108
PFAM: Activator of Hsp90 ATPase 1 family protein.
 
  
 0.746
Swit_2571
PFAM: bifunctional deaminase-reductase domain protein.
 
     0.619
Swit_4102
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; Belongs to the sigma-70 factor family.
 
  
 0.595
Swit_0627
Peptidase M10, serralysin-like protein; PFAM: Hemolysin-type calcium-binding region; peptidase M12A, astacin; peptidase M10A and M12B, matrixin and adamalysin; Peptidase M10, serralysin-like; SMART: peptidase, metallopeptidase.
     
 0.540
Swit_0707
PFAM: Activator of Hsp90 ATPase 1 family protein.
 
  
 0.531
Swit_1540
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type.
 
  
 0.455
Swit_4101
Alkylhydroperoxidase like protein, AhpD family; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
 
   
 0.447
Swit_0489
PFAM: bifunctional deaminase-reductase domain protein.
 
     0.443
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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