Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_0646TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase. (592 aa)    
Predicted Functional Partners:
Swit_0645
TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein.
       0.741
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
 0.643
Swit_1912
PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase.
  
 
0.637
Swit_0644
PFAM: Tetratricopeptide TPR_4.
     
 0.614
Swit_3098
PFAM: Ankyrin.
  
 0.613
Swit_2821
PFAM: Ankyrin.
  
 0.600
Swit_1926
PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.591
Swit_3706
PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.591
Swit_3248
PFAM: histone deacetylase superfamily.
  
 0.569
Swit_3915
PFAM: histone deacetylase superfamily.
  
 0.569
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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