Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Swit_0670 | Swit_0671 | PFAM: regulatory protein, LuxR. | Hypothetical protein. | 0.493 |
Swit_0670 | Swit_0672 | PFAM: regulatory protein, LuxR. | PFAM: Rieske [2Fe-2S] domain protein. | 0.515 |
Swit_0670 | Swit_0673 | PFAM: regulatory protein, LuxR. | PFAM: TonB-dependent receptor; TonB-dependent receptor, plug. | 0.493 |
Swit_0670 | Swit_0675 | PFAM: regulatory protein, LuxR. | Hypothetical protein. | 0.430 |
Swit_0671 | Swit_0670 | Hypothetical protein. | PFAM: regulatory protein, LuxR. | 0.493 |
Swit_0671 | Swit_0672 | Hypothetical protein. | PFAM: Rieske [2Fe-2S] domain protein. | 0.773 |
Swit_0671 | Swit_0673 | Hypothetical protein. | PFAM: TonB-dependent receptor; TonB-dependent receptor, plug. | 0.773 |
Swit_0671 | Swit_0674 | Hypothetical protein. | PFAM: Endoribonuclease L-PSP. | 0.511 |
Swit_0671 | Swit_0675 | Hypothetical protein. | Hypothetical protein. | 0.511 |
Swit_0672 | Swit_0670 | PFAM: Rieske [2Fe-2S] domain protein. | PFAM: regulatory protein, LuxR. | 0.515 |
Swit_0672 | Swit_0671 | PFAM: Rieske [2Fe-2S] domain protein. | Hypothetical protein. | 0.773 |
Swit_0672 | Swit_0673 | PFAM: Rieske [2Fe-2S] domain protein. | PFAM: TonB-dependent receptor; TonB-dependent receptor, plug. | 0.773 |
Swit_0672 | Swit_0674 | PFAM: Rieske [2Fe-2S] domain protein. | PFAM: Endoribonuclease L-PSP. | 0.550 |
Swit_0672 | Swit_0675 | PFAM: Rieske [2Fe-2S] domain protein. | Hypothetical protein. | 0.524 |
Swit_0673 | Swit_0670 | PFAM: TonB-dependent receptor; TonB-dependent receptor, plug. | PFAM: regulatory protein, LuxR. | 0.493 |
Swit_0673 | Swit_0671 | PFAM: TonB-dependent receptor; TonB-dependent receptor, plug. | Hypothetical protein. | 0.773 |
Swit_0673 | Swit_0672 | PFAM: TonB-dependent receptor; TonB-dependent receptor, plug. | PFAM: Rieske [2Fe-2S] domain protein. | 0.773 |
Swit_0673 | Swit_0674 | PFAM: TonB-dependent receptor; TonB-dependent receptor, plug. | PFAM: Endoribonuclease L-PSP. | 0.511 |
Swit_0673 | Swit_0675 | PFAM: TonB-dependent receptor; TonB-dependent receptor, plug. | Hypothetical protein. | 0.511 |
Swit_0674 | Swit_0671 | PFAM: Endoribonuclease L-PSP. | Hypothetical protein. | 0.511 |
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