STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_0685Hypothetical protein. (182 aa)    
Predicted Functional Partners:
Swit_0686
PFAM: beta-lactamase domain protein.
 
 
 0.936
Swit_0690
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein.
 
   
 0.803
Swit_0691
Hypothetical protein.
 
   
 0.782
Swit_0692
SMART: extracellular solute-binding protein, family 3.
 
  
 0.781
Swit_0693
PFAM: Pyrrolo-quinoline quinone.
 
   
 0.772
ybeY
Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
   
   0.745
Swit_1001
PFAM: Pyrrolo-quinoline quinone.
 
   
 0.731
rpsQ
SSU ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
  
   0.729
Swit_0700
PFAM: domain of unknown function DUF1745.
 
    0.711
rplQ
PFAM: ribosomal protein L17.
  
   0.710
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.