Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_0692SMART: extracellular solute-binding protein, family 3. (285 aa)    
Predicted Functional Partners:
Swit_0691
Hypothetical protein.
 
  
 0.971
Swit_0690
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein.
 
  
 0.915
Swit_0693
PFAM: Pyrrolo-quinoline quinone.
 
  
 0.913
Swit_0689
Hypothetical protein.
 
   
 0.816
Swit_0685
Hypothetical protein.
 
  
 0.783
Swit_0686
PFAM: beta-lactamase domain protein.
 
   
 0.783
Swit_0700
PFAM: domain of unknown function DUF1745.
 
  
 0.773
Swit_0694
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2.
 
 
 
 0.766
Swit_0699
Signal transduction histidine kinase; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein.
 
 
 0.751
Swit_1441
PFAM: Pyrrolo-quinoline quinone.
 
  
 0.745
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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