STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_0716Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type. (296 aa)    
Predicted Functional Partners:
Swit_0934
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type.
  
     0.762
Swit_4347
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type.
  
     0.731
Swit_4177
PFAM: helix-turn-helix- domain containing protein, AraC type.
  
     0.711
Swit_1540
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type.
  
     0.699
Swit_3370
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type.
 
 
 0.682
Swit_2039
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type.
  
     0.591
Swit_0715
PFAM: amidohydrolase; Amidohydrolase 3.
       0.516
Swit_0733
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type.
  
     0.494
Swit_4803
SMART: helix-turn-helix- domain containing protein, AraC type.
  
     0.492
Swit_0309
Transcriptional regulator, AraC family with amidase-like domain; PFAM: helix-turn-helix- domain containing protein, AraC type.
 
 
0.475
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.