STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_0722PFAM: helix-turn-helix- domain containing protein, AraC type. (358 aa)    
Predicted Functional Partners:
Swit_0721
PFAM: Pyrrolo-quinoline quinone.
     
 0.640
Swit_0723
PFAM: protein of unknown function DUF1486.
       0.498
Swit_0724
Methylenetetrahydromethanopterin reductase; PFAM: luciferase family protein.
       0.484
Swit_3885
PFAM: flavin-containing monooxygenase FMO.
 
   
 0.472
Swit_0747
Transcriptional regulator, MarR family; PFAM: regulatory protein, MarR.
  
  
 0.436
Swit_0326
Transcriptional regulator, AraC family with amidase-like domain; PFAM: helix-turn-helix- domain containing protein, AraC type.
 
 
 0.426
Swit_0725
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
       0.415
Swit_1882
Transcriptional regulator, MarR family; PFAM: regulatory protein, MarR.
  
  
 0.401
Swit_3370
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type.
 
 
 0.400
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.