Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_0737PFAM: major facilitator superfamily MFS_1. (437 aa)    
Predicted Functional Partners:
Swit_0738
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.
 
   
 0.599
Swit_0739
Hypothetical protein.
 
   
 0.558
Swit_0740
PFAM: short-chain dehydrogenase/reductase SDR; KR.
     
 0.499
Swit_2287
PFAM: General substrate transporter; major facilitator superfamily MFS_1.
 
  
 0.493
Swit_0736
PFAM: NAD/NADP octopine/nopaline dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein.
     
 0.487
Swit_0734
PFAM: FAD linked oxidase domain protein.
     
 0.483
Swit_4243
PFAM: General substrate transporter; major facilitator superfamily MFS_1.
 
  
 0.477
Swit_0735
PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding.
       0.466
Swit_0741
Transcriptional regulator, MarR family; PFAM: regulatory protein, MarR.
     
 0.402
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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