STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_0741Transcriptional regulator, MarR family; PFAM: regulatory protein, MarR. (157 aa)    
Predicted Functional Partners:
Swit_0739
Hypothetical protein.
 
  
 0.867
Swit_0738
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.
 
  
 0.854
Swit_0740
PFAM: short-chain dehydrogenase/reductase SDR; KR.
 
   
 0.747
Swit_0745
Hypothetical protein.
 
     0.734
Swit_0743
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
 
   
 0.722
Swit_4186
Hypothetical protein.
 
     0.713
Swit_4189
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
 
   
 0.713
Swit_4185
Hypothetical protein.
 
  
 0.679
Swit_4184
PFAM: Acyl-CoA dehydrogenase, type 2, C-terminal domain.
 
  
 0.677
Swit_4295
PFAM: Acyl-CoA dehydrogenase, type 2, C-terminal domain.
 
  
 0.676
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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