Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
Swit_0774SMART: regulatory protein, LuxR. (242 aa)    
Predicted Functional Partners:
Swit_0775
PFAM: beta-lactamase domain protein.
 
 
 
 0.849
Swit_0777
Hypothetical protein.
 
     0.800
Swit_0776
PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase.
 
   
 0.796
Swit_4239
PFAM: regulatory protein, LuxR.
  
   
 0.687
Swit_3526
PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase.
 
   
 0.411
Swit_3411
Transcriptional regulator, LuxR family; PFAM: regulatory protein, LuxR.
  
     0.405
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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