STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_0776PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase. (524 aa)    
Predicted Functional Partners:
Swit_0775
PFAM: beta-lactamase domain protein.
 
  
 0.966
Swit_0777
Hypothetical protein.
 
    0.962
Swit_1569
PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase.
  
  
 
0.921
Swit_3526
PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase.
  
  
 
0.912
Swit_4311
PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B.
  
 
 0.910
Swit_0774
SMART: regulatory protein, LuxR.
 
     0.798
Swit_3392
Transcriptional regulator, MarR family; PFAM: regulatory protein, MarR.
 
  
 0.661
Swit_0925
PFAM: short-chain dehydrogenase/reductase SDR.
   
  
 0.643
Swit_3288
PFAM: short-chain dehydrogenase/reductase SDR.
   
  
 0.643
Swit_1557
PFAM: homogentisate 1,2-dioxygenase.
 
  
 0.579
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.