STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_0777Hypothetical protein. (64 aa)    
Predicted Functional Partners:
Swit_0776
PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase.
 
    0.958
Swit_0775
PFAM: beta-lactamase domain protein.
 
     0.952
Swit_0774
SMART: regulatory protein, LuxR.
 
     0.800
Swit_3526
PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase.
 
    0.798
Swit_3392
Transcriptional regulator, MarR family; PFAM: regulatory protein, MarR.
 
     0.642
Swit_1557
PFAM: homogentisate 1,2-dioxygenase.
 
     0.507
hmgA
Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate.
 
     0.485
Swit_1882
Transcriptional regulator, MarR family; PFAM: regulatory protein, MarR.
 
     0.447
Swit_3058
TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal domain.
 
     0.412
Swit_0739
Hypothetical protein.
  
     0.408
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.