STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_0785PFAM: protein of unknown function DUF323. (428 aa)    
Predicted Functional Partners:
Swit_0784
Conserved hypothetical protein.
  
 0.992
Swit_4573
Conserved hypothetical protein.
  
 0.946
Swit_0786
PFAM: binding-protein-dependent transport systems inner membrane component; Substrate-binding region of ABC-type glycine betaine transport system.
 
     0.728
Swit_0787
PFAM: ABC transporter related; SMART: AAA ATPase.
       0.581
Swit_3108
TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.
       0.510
Swit_0381
PFAM: sulfatase.
  
   0.435
Swit_1858
PFAM: sulfatase.
  
   0.435
Swit_2397
Type I phosphodiesterase/nucleotide pyrophosphatase; Alkaline phosphatase with broad substrate specificity.
  
   0.435
Swit_2516
PFAM: sulfatase.
  
   0.435
Swit_2518
PFAM: sulfatase.
  
   0.435
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.