STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_0793Acetyltransferase (isoleucine patch superfamily)-like protein. (204 aa)    
Predicted Functional Partners:
Swit_0792
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.916
Swit_2371
PFAM: sugar transferase.
  
 0.820
Swit_0791
Hypothetical protein.
  
    0.786
Swit_4009
PFAM: glycosyl transferase, group 1; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein.
  
  
 0.727
Swit_4817
Non-specific protein-tyrosine kinase; PFAM: lipopolysaccharide biosynthesis protein.
 
  
 0.725
Swit_4528
Non-specific protein-tyrosine kinase; PFAM: lipopolysaccharide biosynthesis protein.
 
  
 0.721
Swit_0790
PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.655
Swit_2644
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.618
Swit_0794
PFAM: Tetratricopeptide TPR_4.
       0.605
Swit_0795
Hypothetical protein.
       0.586
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.