STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_0802PFAM: Tetratricopeptide TPR_2 repeat protein; Belongs to the bacterial secretin family. (465 aa)    
Predicted Functional Partners:
Swit_2590
PFAM: PDZ/DHR/GLGF domain protein.
  
 
 0.827
Swit_0588
Hypothetical protein.
  
  
 0.672
Swit_0804
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein, LuxR; response regulator receiver.
  
    0.585
Swit_0803
Putative signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein.
     
 0.580
Swit_1459
Flagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
  
  
 0.578
Swit_0214
PFAM: type III secretion exporter.
  
 
 0.550
Swit_1290
TIGRFAM: ATPase, FliI/YscN family; PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region; SMART: AAA ATPase.
  
  
 0.480
Swit_2580
Hypothetical protein.
  
  
 0.480
Swit_2583
PFAM: type II secretion system protein.
  
  
 0.449
Swit_0164
SMART: AAA ATPase.
  
  
 0.424
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.