Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Swit_0811Hypothetical protein. (134 aa)    
Predicted Functional Partners:
Swit_0812
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
       0.714
Swit_2284
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
  
     0.623
Swit_2292
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
  
     0.620
Swit_1679
Hypothetical protein.
  
     0.497
Swit_0813
Hypothetical protein.
       0.475
Swit_2298
PFAM: monooxygenase, FAD-binding.
  
     0.473
Swit_3331
PFAM: Ethyl tert-butyl ether degradation EthD.
 
     0.447
Swit_3045
PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase.
  
     0.446
Swit_3059
TIGRFAM: gentisate 1,2-dioxygenase; PFAM: Cupin 2, conserved barrel domain protein.
  
     0.432
Swit_1438
PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase.
  
     0.419
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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