Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_0832PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase. (334 aa)    
Predicted Functional Partners:
Swit_0829
TIGRFAM: benzoate-CoA ligase family; PFAM: AMP-dependent synthetase and ligase.
  
 
  0.939
Swit_0418
Glutamate dehydrogenase (NADP); PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase, dimerisation region; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
 
 0.932
Swit_1330
Glutamate dehydrogenase (NADP); PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase, dimerisation region; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
 
 0.932
Swit_0965
Formamidase; PFAM: Acetamidase/Formamidase.
 
  
 0.926
Swit_0732
PFAM: aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.919
Swit_1691
PFAM: aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.919
Swit_3753
PFAM: aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.919
Swit_4806
PFAM: aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.919
Swit_4178
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
  
  
 
0.918
Swit_2469
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
  
  
 0.917
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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