STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_0837PFAM: Rieske [2Fe-2S] domain protein. (346 aa)    
Predicted Functional Partners:
Swit_3024
Vanillate monooxygenase; PFAM: Rieske [2Fe-2S] domain protein.
 
     0.777
Swit_1542
PFAM: Rieske [2Fe-2S] domain protein.
 
     0.776
Swit_4861
PFAM: Rieske [2Fe-2S] domain protein.
 
     0.775
Swit_3413
Vanillate monooxygenase; PFAM: Rieske [2Fe-2S] domain protein.
 
     0.774
Swit_2034
PFAM: Rieske [2Fe-2S] domain protein.
  
     0.773
Swit_4297
Phthalate 4,5-dioxygenase; PFAM: Rieske [2Fe-2S] domain protein.
  
     0.761
Swit_0836
PFAM: Endoribonuclease L-PSP.
  
    0.633
Swit_0838
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
       0.542
Swit_0743
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
  
 
 0.465
Swit_0889
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
  
 
 0.465
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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