STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_0857Transcriptional regulator, MarR family; PFAM: regulatory protein, MarR. (294 aa)    
Predicted Functional Partners:
Swit_0449
PFAM: polysaccharide biosynthesis protein.
 
    0.776
Swit_4112
Hypothetical protein.
  
    0.774
Swit_0855
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein.
  
 
 0.773
Swit_0010
Hypothetical protein.
  
     0.760
Swit_2693
Hypothetical protein.
  
     0.757
Swit_3114
Hypothetical protein.
  
     0.755
Swit_0407
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein.
  
   
 0.754
Swit_4566
Hypothetical protein.
  
     0.744
Swit_0035
Hypothetical protein.
  
     0.742
Swit_1228
Putative signal transduction protein with EFhand domain.
  
     0.742
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.