STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_0888PFAM: alpha/beta hydrolase fold. (282 aa)    
Predicted Functional Partners:
Swit_0886
PFAM: alpha/beta hydrolase fold.
 
     0.936
Swit_2111
PFAM: Hydratase/decarboxylase.
 
 
 0.933
Swit_3520
PFAM: Hydratase/decarboxylase.
 
 
 0.933
Swit_0911
PFAM: Hydratase/decarboxylase.
 
 
 0.932
Swit_1639
PFAM: Hydratase/decarboxylase.
 
 
 0.932
Swit_0742
2-keto-4-pentenoate hydratase-like protein.
  
 
 0.911
Swit_4311
PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B.
  
 
 0.909
Swit_0889
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
 
  
 0.818
Swit_0890
PFAM: ring hydroxylating dioxygenase, alpha subunit; Rieske [2Fe-2S] domain protein.
   
 
 0.809
Swit_0887
PFAM: Amidase; Belongs to the amidase family.
     
 0.789
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.