Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_0890PFAM: ring hydroxylating dioxygenase, alpha subunit; Rieske [2Fe-2S] domain protein. (497 aa)    
Predicted Functional Partners:
Swit_0889
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
 
 
 0.995
Swit_4281
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
 
 
 0.969
Swit_0898
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
  
 
 0.917
Swit_0893
PFAM: Rieske [2Fe-2S] domain protein.
  
 
 0.909
Swit_2055
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
    
 0.906
Swit_2251
PFAM: Rieske [2Fe-2S] domain protein.
  
 
 0.906
Swit_1757
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
 
 
 0.891
Swit_1875
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
 
 
 0.887
Swit_1532
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
 
 
 0.865
Swit_2635
2-chlorobenzoate 1,2-dioxygenase; PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
 
 
 0.857
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.