STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_0892Flavoprotein involved in K+ transport-like protein. (492 aa)    
Predicted Functional Partners:
Swit_3839
Hypothetical protein.
    
 
 0.651
Swit_4229
PFAM: alpha/beta hydrolase fold.
 
 
 0.558
atpA
ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.
   
   0.557
Swit_0896
PFAM: Rieske [2Fe-2S] domain protein.
       0.546
Swit_0893
PFAM: Rieske [2Fe-2S] domain protein.
       0.535
Swit_0894
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
       0.534
Swit_0895
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
       0.534
Swit_0898
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
 
   
 0.503
atpG
ATP synthase F1, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.
   
   0.486
Swit_0897
PFAM: short-chain dehydrogenase/reductase SDR.
 
 
 0.485
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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