STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_0893PFAM: Rieske [2Fe-2S] domain protein. (106 aa)    
Predicted Functional Partners:
Swit_0898
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
 
 0.993
Swit_2055
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
 
 0.986
Swit_2251
PFAM: Rieske [2Fe-2S] domain protein.
 
  
  0.977
Swit_0104
PFAM: oxidoreductase FAD/NAD(P)-binding domain protein.
  
 
 0.913
Swit_0890
PFAM: ring hydroxylating dioxygenase, alpha subunit; Rieske [2Fe-2S] domain protein.
    
 0.909
Swit_0895
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
 
  
 0.848
Swit_1707
TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein.
  
 
 0.835
Swit_0896
PFAM: Rieske [2Fe-2S] domain protein.
     
 0.795
Swit_0894
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
       0.782
Swit_1987
PFAM: Rieske [2Fe-2S] domain protein.
 
     0.750
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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