Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_0898PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase. (409 aa)    
Predicted Functional Partners:
Swit_0893
PFAM: Rieske [2Fe-2S] domain protein.
 
 0.993
Swit_2251
PFAM: Rieske [2Fe-2S] domain protein.
 
 0.951
Swit_2055
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
 
  
0.920
Swit_0890
PFAM: ring hydroxylating dioxygenase, alpha subunit; Rieske [2Fe-2S] domain protein.
  
 
 0.917
Swit_1709
Assimilatory nitrate reductase (NADH) alpha subunit apoprotein; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; BFD domain protein [2Fe-2S]-binding domain protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
   
 0.827
Swit_0897
PFAM: short-chain dehydrogenase/reductase SDR.
  
 
 0.807
Swit_0944
PFAM: Sarcosine oxidase, delta subunit, heterotetrameric.
  
 
 0.757
Swit_0942
PFAM: Sarcosine oxidase, gamma subunit.
  
 
 0.746
Swit_2616
PFAM: copper resistance protein CopC.
    
   0.666
Swit_0969
PFAM: Rieske [2Fe-2S] domain protein.
 
 
 0.649
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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