Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Swit_0908PFAM: Integrase, catalytic region. (501 aa)    
Predicted Functional Partners:
Swit_0909
PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase.
 
 
 0.962
Swit_2464
PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase.
 
 
 0.842
Swit_3052
PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase.
 
 
 0.842
Swit_3391
PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase.
 
 
 0.842
Swit_3484
PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase.
 
 
 0.842
Swit_0907
Hypothetical protein.
       0.506
Swit_0910
PFAM: alpha/beta hydrolase fold.
       0.415
Swit_0911
PFAM: Hydratase/decarboxylase.
       0.415
Swit_0912
PFAM: Hydratase/decarboxylase.
       0.415
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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