STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_0925PFAM: short-chain dehydrogenase/reductase SDR. (251 aa)    
Predicted Functional Partners:
Swit_3288
PFAM: short-chain dehydrogenase/reductase SDR.
  
  
 
0.916
Swit_3280
PFAM: short-chain dehydrogenase/reductase SDR; KR.
 
 
 0.799
Swit_3313
PFAM: short-chain dehydrogenase/reductase SDR; KR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.795
Swit_2082
PFAM: short-chain dehydrogenase/reductase SDR; KR.
  
     0.774
Swit_3403
PFAM: short-chain dehydrogenase/reductase SDR; KR.
  
     0.688
Swit_1010
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.669
Swit_0924
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
  
  
 0.657
Swit_0776
PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase.
   
  
 0.643
Swit_1569
PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase.
   
  
 0.643
Swit_3526
PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase.
   
  
 0.643
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.