Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_0926PFAM: regulatory protein, LuxR; Tetratricopeptide TPR_4; Sigma-70, region 4 type 2. (878 aa)    
Predicted Functional Partners:
Swit_0833
PFAM: regulatory protein, LuxR.
  
     0.761
Swit_0925
PFAM: short-chain dehydrogenase/reductase SDR.
       0.501
Swit_0927
PFAM: Amidase; Belongs to the amidase family.
       0.497
Swit_2814
Transcriptional regulator, LuxR family; PFAM: regulatory protein, LuxR.
 
   
 0.477
Swit_0928
PFAM: polysaccharide deacetylase.
       0.461
Swit_0929
PFAM: short-chain dehydrogenase/reductase SDR.
       0.434
Swit_0924
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
       0.427
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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