Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_0932PFAM: Rieske [2Fe-2S] domain protein. (418 aa)    
Predicted Functional Partners:
Swit_0939
PFAM: FAD dependent oxidoreductase; glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein, C-terminal barrel; Belongs to the GcvT family.
 
 
 0.930
Swit_0943
PFAM: glycine cleavage T protein (aminomethyl transferase); FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Glycine cleavage T-protein, C-terminal barrel; Belongs to the GcvT family.
 
  
 0.819
Swit_0944
PFAM: Sarcosine oxidase, delta subunit, heterotetrameric.
 
    0.800
Swit_0945
TIGRFAM: sarcosine oxidase, beta subunit family; PFAM: FAD dependent oxidoreductase.
 
    0.753
Swit_0942
PFAM: Sarcosine oxidase, gamma subunit.
 
  
 0.734
Swit_0933
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; Belongs to the LysR transcriptional regulatory family.
       0.580
Swit_0889
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
 
 
 0.577
Swit_1757
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
 
 
 0.575
Swit_4281
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
 
 
 0.573
Swit_1875
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
 
 
 0.564
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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