STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_0949Sulfite dehydrogenase (cytochrome) subunit SorA apoprotein; PFAM: oxidoreductase, molybdopterin binding; Mo-co oxidoreductase dimerisation domain. (412 aa)    
Predicted Functional Partners:
Swit_0948
Hypothetical protein.
 
 
 
 0.990
Swit_0950
PFAM: conserved hypothetical protein 698.
       0.789
Swit_1001
PFAM: Pyrrolo-quinoline quinone.
 
 
 
 0.623
Swit_0951
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; Belongs to the LysR transcriptional regulatory family.
       0.601
Swit_3727
Hypothetical protein.
   
 
 0.540
Swit_1434
Nitric oxide dioxygenase; PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; MOSC domain containing protein; Oxidoreductase FAD-binding domain protein.
 
  
 0.486
Swit_2411
PFAM: cytochrome c, class I.
  
 
 0.485
Swit_3255
PFAM: cytochrome c, class I.
  
 
 0.485
Swit_4131
PFAM: cytochrome c, class I.
  
 
 0.485
Swit_4687
PFAM: cytochrome c, class I.
  
 
 0.485
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.