Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Swit_0743 | Swit_0962 | PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit. | PFAM: Rieske [2Fe-2S] domain protein. | 0.589 |
Swit_0743 | Swit_4281 | PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit. | PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit. | 0.456 |
Swit_0889 | Swit_0962 | PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit. | PFAM: Rieske [2Fe-2S] domain protein. | 0.735 |
Swit_0889 | Swit_1532 | PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit. | PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit. | 0.771 |
Swit_0961 | Swit_0962 | Hypothetical protein. | PFAM: Rieske [2Fe-2S] domain protein. | 0.767 |
Swit_0961 | Swit_0963 | Hypothetical protein. | Hypothetical protein. | 0.677 |
Swit_0962 | Swit_0743 | PFAM: Rieske [2Fe-2S] domain protein. | PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit. | 0.589 |
Swit_0962 | Swit_0889 | PFAM: Rieske [2Fe-2S] domain protein. | PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit. | 0.735 |
Swit_0962 | Swit_0961 | PFAM: Rieske [2Fe-2S] domain protein. | Hypothetical protein. | 0.767 |
Swit_0962 | Swit_0963 | PFAM: Rieske [2Fe-2S] domain protein. | Hypothetical protein. | 0.691 |
Swit_0962 | Swit_1532 | PFAM: Rieske [2Fe-2S] domain protein. | PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit. | 0.629 |
Swit_0962 | Swit_1757 | PFAM: Rieske [2Fe-2S] domain protein. | PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit. | 0.699 |
Swit_0962 | Swit_1875 | PFAM: Rieske [2Fe-2S] domain protein. | PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit. | 0.679 |
Swit_0962 | Swit_2635 | PFAM: Rieske [2Fe-2S] domain protein. | 2-chlorobenzoate 1,2-dioxygenase; PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit. | 0.608 |
Swit_0962 | Swit_3368 | PFAM: Rieske [2Fe-2S] domain protein. | Hypothetical protein. | 0.587 |
Swit_0962 | Swit_4281 | PFAM: Rieske [2Fe-2S] domain protein. | PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit. | 0.709 |
Swit_0963 | Swit_0961 | Hypothetical protein. | Hypothetical protein. | 0.677 |
Swit_0963 | Swit_0962 | Hypothetical protein. | PFAM: Rieske [2Fe-2S] domain protein. | 0.691 |
Swit_1532 | Swit_0889 | PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit. | PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit. | 0.771 |
Swit_1532 | Swit_0962 | PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit. | PFAM: Rieske [2Fe-2S] domain protein. | 0.629 |
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